Identification of spectroscopic patterns of CH...O H-bonds in proteins

J Phys Chem B. 2009 Jul 30;113(30):10421-7. doi: 10.1021/jp9035138.

Abstract

Ab initio calculations are used to identify characteristics of vibrational and NMR spectra that signal the involvement of a protein backbone in a CH...O H-bond and that distinguish this sort of interaction from other H-bonds in which a protein might participate. Glycine and alanine dipeptides, in both their C7 and C5 minimum-energy structures, are paired with formamide in a number of different H-bonding arrangements. The CH...O H-bond is characterized by a small contraction of the C-H bond length, along with a blue shift in its stretching frequency, accompanied by an intensification of this vibrational band. In the context of NMR spectra, the bridging CH proton's chemical shift is moved downfield by 1-2 ppm. The aforementioned features are not produced by other H-bonds in which the protein backbone might participate, such as NH proton donation or accepting a proton via the peptide C=O.

MeSH terms

  • Dipeptides / chemistry
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Protein Conformation
  • Proteins / chemistry*
  • Protons

Substances

  • Dipeptides
  • Proteins
  • Protons