Interest in stipitate hydnoid fungi of the genera Bankera, Hydnellum, Phellodon and Sarcodon has increased due to the decline in numbers of sporocarps in Europe. Conservation of these fungi is hindered by a lack of understanding of their basic ecology. In particular, a better understanding of their belowground ecology is required. Real-time PCR in conjunction with spatially explicit sampling was used to quantify the relationship between sporocarps and mycelium of Hydnellum peckii and Phellodon tomentosus. Species-specific DNA of the target species was quantified in 100 soil samples collected on a 360 x 360 cm grid at five locations where sporocarps were present. All sporocarps within the grid and up to 2 m around the grid were mapped. Sporocarp production did not occur over the whole extent of the belowground mycelium of these two species, and mycelium extended up to 330 cm away from the immediate site of sporocarp production. Spatial analyses using Kernel-smoothing and Moran's I correlograms showed that, with a single exception, there was no quantitative relationship between sporocarp distribution and the belowground abundance of mycelium. These findings have important implications for the conservation of this rare group of fungi.