Identification and expression analysis of the Steinernema carpocapsae elastase-like serine protease gene during the parasitic stage

Exp Parasitol. 2009 May;122(1):51-60. doi: 10.1016/j.exppara.2009.01.014. Epub 2009 Feb 3.

Abstract

A cDNA encoding elastase was isolated from Steinernema carpocapsae by suppression subtractive hybridization and rapid amplification of 5' cDNA ends. The predicted protein contained a 19-aa signal peptide, a 44-aa N-terminal propeptide, and a 264-aa mature protein with a predicted molecular mass of 28,949 Da and a theoretical pI of 8.88. BLAST analysis showed 27-35% amino acid sequence identity to serine proteases from insects, mammals, fish and other organisms. The Sc-ela gene contains three exons and two introns with at least two copies in the S. carpocapsae genome. Expression analysis indicated that the Sc-ela gene was upregulated during the initial parasitic stage. Sequence comparison and evolutionary marker analysis revealed that Sc-ELA was a member of the elastase serine protease family with potential degradative, developmental and fibrinolytic activities. Homology modeling showed that Sc-ELA adopts a two beta-barrel fold typical of trypsin-like serine proteases, and phylogenetic analysis indicates that Sc-ELA branched off early during elastase evolution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blotting, Southern
  • Cloning, Molecular
  • DNA, Complementary / chemistry
  • Gene Expression Regulation, Enzymologic*
  • Host-Parasite Interactions
  • Molecular Sequence Data
  • Pest Control, Biological
  • Phylogeny
  • RNA, Helminth / genetics
  • RNA, Helminth / isolation & purification
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rhabditida / classification
  • Rhabditida / enzymology
  • Rhabditida / genetics*
  • Sequence Alignment
  • Serine Proteases / biosynthesis
  • Serine Proteases / chemistry
  • Serine Proteases / genetics*
  • Substrate Specificity

Substances

  • DNA, Complementary
  • RNA, Helminth
  • Serine Proteases