Chromosomal assignment of porcine pregnancy-associated glycoprotein gene family

Anim Reprod Sci. 2010 Jan;117(1-2):127-34. doi: 10.1016/j.anireprosci.2009.04.006. Epub 2009 May 4.

Abstract

This study presents the chromosomal assignment of a multiple pregnancy-associated glycoprotein (PAG) gene family in the domestic pig (pPAG). The pPAG locus was identified by physical mapping (fluorescent in situ hybridisation-FISH; with various probes), and additionally confirmed by Southern hybridisation of pPAG amplicons using laser microdissected Sus scrofa chromosome 1 (SSC1), as genomic templates. Various pPAG probes were produced with the use of diverse identified templates: pPAG1-6, -8, -10 cDNAs (GenBank: L34360-1, AF315377, AF272734, AY188554, AF272735, AY373029 and AY775784, respectively), or genomic DNA (gDNA) probes of pPAG2 gene and its promoter (GenBank: U39198-9, U39762-3, U41421-4). All probes, including long gDNA probes (approximately 9.2kbp GpPAG2 gene; approximately 2.8kbp GpPAG2 promoter), a shorter cDNA probe (PlpPAG4, 1385bp) and amplified pPAG2-like probes (ApPAG2L) specific for cDNA inserts of pPAG2-like gene subfamily (pPAG2, -4, -6, -8 and -10; 1283-1385bp) were produced by random priming using biotin-labelled deoxynucleotides (16-dUTP). Numerous FISH mappings with various pPAG probes revealed the chromosomal assignment of the pPAG gene family to the long arm of porcine chromosome 1 (SSC1q16-q24 region). This cytogenetic assignment was confirmed by Southern hybridisation (with (32)P-labelled pPAG10 probe) of multiple distinct pPAG amplicons (603-3943bp) produced with the use of 25 laser microdissected SSC1, as gDNA templates. This is the first study identifying the chromosomal locus of the pPAG gene family in the pig.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Aspartic Acid Endopeptidases / genetics
  • Blotting, Southern
  • Chromosome Mapping / veterinary*
  • DNA Probes / genetics
  • DNA, Complementary / genetics
  • Female
  • Glycoproteins / genetics*
  • In Situ Hybridization, Fluorescence
  • Pregnancy
  • Pregnancy Proteins / genetics*
  • Promoter Regions, Genetic / genetics
  • Swine / genetics*

Substances

  • DNA Probes
  • DNA, Complementary
  • Glycoproteins
  • Pregnancy Proteins
  • Aspartic Acid Endopeptidases
  • pregnancy-associated glycoprotein 1
  • pregnancy-associated glycoprotein 2