Crystallization and preliminary crystallographic studies of human RIG-I in complex with double-stranded RNA

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt 6):648-50. doi: 10.1107/S1744309109018405. Epub 2009 May 23.

Abstract

Retinoic acid inducible gene-I (RIG-I) is an essential component of the innate immune system that is responsible for the detection and elimination of invading viruses. RIG-I recognizes viral RNAs inside the cell and then initiates downstream signalling to activate the IRF-3 and NF-kappaB genes, which results in the production of type I interferons. RIG-I is composed of an N-terminal CARD domain for signalling and C-terminal helicase and repressor domains for RNA recognition. A RIG-I-RNA binding assay was performed to investigate the in vitro RIG-I-RNA binding properties. Selenomethionine-incorporated RIG-I was expressed using Escherichia coli and purified for crystallization. X-ray data were collected from RIG-I-dsRNA complex crystals to 2.8 A resolution using synchrotron radiation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray*
  • DEAD Box Protein 58
  • DEAD-box RNA Helicases / chemistry
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / isolation & purification
  • DEAD-box RNA Helicases / metabolism*
  • Data Collection
  • Escherichia coli / genetics
  • Ethidium / metabolism
  • Fluorescent Dyes / metabolism
  • Histidine / chemistry
  • Humans
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Protein Binding
  • Protein Structure, Tertiary
  • RNA, Double-Stranded / metabolism*
  • Receptors, Immunologic
  • Statistics as Topic
  • Synchrotrons
  • Temperature

Substances

  • Fluorescent Dyes
  • RNA, Double-Stranded
  • Receptors, Immunologic
  • Histidine
  • RIGI protein, human
  • DEAD Box Protein 58
  • DEAD-box RNA Helicases
  • Ethidium