Metal dependence of oxalate decarboxylase activity

Biochemistry. 2009 Jul 7;48(26):6116-25. doi: 10.1021/bi801856k.

Abstract

Bacillus subtilis oxalate decarboxylase (OxDC) catalyzes the conversion of oxalate into CO(2) and formate. The enzyme is composed of two cupin domains, each of which contains a Mn(II) ion. Although there is general agreement that Mn(II) in the N-terminal domain mediates OxDC-catalyzed decarboxylation, legitimate questions have been raised concerning the function (if any) of the Mn(II) bound in the C-terminal cupin domain. We have investigated this problem using a series of OxDC mutants in which Mn(II) binding is perturbed by mutagenesis of Glu-101 and Glu-280, which coordinate the metal in the N-terminal and C-terminal domains, respectively. We now demonstrate that decarboxylase activity and total manganese content are sensitive to modifications in either metal-binding glutamate residue. These findings, in combination with EPR measurements, raise the possibility that the C-terminal Mn(II) center can catalyze the decarboxylation reaction. Further support for this conclusion has been provided from a combination of in vivo and in vitro strategies for preparing wild-type OxDC in which Mn(II) is incorporated to a variety of extents. Kinetic characterization of these variants shows that OxDC activity is linearly correlated with manganese content, as might be expected if both sites can catalyze the breakdown of oxalate into formate and CO(2). These studies also represent the first unequivocal demonstration that OxDC activity is uniquely mediated by manganese.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Substitution
  • Bacillus subtilis / enzymology
  • Biocatalysis
  • Carboxy-Lyases / chemistry*
  • Carboxy-Lyases / genetics
  • Carboxy-Lyases / metabolism*
  • Catalytic Domain / genetics
  • Circular Dichroism
  • Cobalt / chemistry
  • Electron Spin Resonance Spectroscopy
  • Kinetics
  • Manganese / metabolism
  • Manganese / pharmacology*
  • Metals, Heavy / chemistry
  • Models, Molecular
  • Protein Structure, Quaternary
  • Protein Structure, Secondary
  • Recombinant Proteins / chemistry
  • Zinc / chemistry

Substances

  • Metals, Heavy
  • Recombinant Proteins
  • Cobalt
  • Manganese
  • Carboxy-Lyases
  • oxalate decarboxylase
  • Zinc