Discovery of spiro-piperidine inhibitors and their modulation of the dynamics of the M2 proton channel from influenza A virus

J Am Chem Soc. 2009 Jun 17;131(23):8066-76. doi: 10.1021/ja900063s.

Abstract

Amantadine has been used for decades as an inhibitor of the influenza A virus M2 protein (AM2) in the prophylaxis and treatment of influenza A infections, but its clinical use has been limited by its central nervous system (CNS) side effects as well as emerging drug-resistant strains of the virus. With the goal of searching for new classes of M2 inhibitors, a structure-activity relation study based on 2-[3-azaspiro(5,5)undecanol]-2-imidazoline (BL-1743) was initiated. The first generation BL-1743 series of compounds has been synthesized and tested by two-electrode voltage-clamp (TEV) assays. The most active compound from this library, 3-azaspiro[5,5]undecane hydrochloride (9), showed an IC(50) as low as 0.92 +/- 0.11 microM against AM2, more than an order of magnitude more potent than amantadine (IC(50) = 16 microM). (15)N and (13)C solid-state NMR was employed to determine the effect of compound 9 on the structure and dynamics of the transmembrane domain of AM2 (AM2-TM) in phospholipid bilayers. Compared to amantadine, spiro-piperidine 9 (1) induces a more homogeneous conformation of the peptide, (2) reduces the dynamic disorder of the G34-I35 backbone near the water-filled central cavity of the helical bundle, and (3) influences the dynamics and magnetic environment of more residues within the transmembrane helices. These data suggest that spiro-piperidine 9 binds more extensively with the AM2 channel, thus leading to stronger inhibitory potency.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amantadine / chemistry
  • Amantadine / pharmacology
  • Animals
  • Antiviral Agents / chemistry*
  • Antiviral Agents / pharmacology
  • Humans
  • Imidazoles / chemistry
  • Imidazoles / pharmacology
  • Influenza A virus / drug effects*
  • Oocytes
  • Piperidines / chemistry
  • Piperidines / pharmacology*
  • Protein Conformation / drug effects
  • Spiro Compounds / chemistry
  • Spiro Compounds / pharmacology*
  • Structure-Activity Relationship
  • Viral Matrix Proteins / antagonists & inhibitors*
  • Xenopus

Substances

  • 2-(3-azaspiro(5,5)undecanol)-2-imidazoline
  • Antiviral Agents
  • Imidazoles
  • M2 protein, Influenza A virus
  • Piperidines
  • Spiro Compounds
  • Viral Matrix Proteins
  • piperidine
  • Amantadine