Self-assembly and evolution of homomeric protein complexes

Phys Rev Lett. 2009 Mar 20;102(11):118106. doi: 10.1103/PhysRevLett.102.118106. Epub 2009 Mar 18.

Abstract

We introduce a simple "patchy particle" model to study the thermodynamics and dynamics of self-assembly of homomeric protein complexes. Our calculations allow us to rationalize recent results for dihedral complexes. Namely, why evolution of such complexes naturally takes the system into a region of interaction space where (i) the evolutionarily newer interactions are weaker, (ii) subcomplexes involving the stronger interactions are observed to be thermodynamically stable on destabilization of the protein-protein interactions, and (iii) the self-assembly dynamics are hierarchical with these same subcomplexes acting as kinetic intermediates.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Models, Chemical*
  • Monte Carlo Method
  • Proteins / chemistry*
  • Proteins / metabolism
  • Thermodynamics

Substances

  • Proteins