Gel purification of radiolabeled nucleic acids via phosphorimaging: Dip-N-Dot

Anal Biochem. 2009 May 15;388(2):351-2. doi: 10.1016/j.ab.2009.02.010. Epub 2009 Feb 14.

Abstract

RNA and DNA oligonucleotides radiolabeled with (32)P or (33)P often require gel electrophoresis to remove undesired side and/or degradation products. Common ways to visualize these molecules after electrophoresis are by ultraviolet (UV) shadowing, which necessarily reduces the specific activity of the oligonucleotide, and by autoradiography using film, which is cumbersome and increases the cost of generating the radiolabeled molecule. A more cost-effective method is to physically inject the gel with a "Dip-N-Dot" solution of dye and radionuclide after electrophoresis but prior to phosphorimaging. The gel can be overlaid on its computer-generated image, allowing the labeled molecules to be visualized quickly.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Autoradiography / methods*
  • Electrophoresis / methods*
  • Nucleic Acids / analysis
  • Nucleic Acids / chemistry*
  • Phosphorus Radioisotopes / chemistry*

Substances

  • Nucleic Acids
  • Phosphorus Radioisotopes