Development of a loop-mediated isothermal amplification for rapid detection of orf virus

J Virol Methods. 2009 May;157(2):200-4. doi: 10.1016/j.jviromet.2009.01.003. Epub 2009 Jan 30.

Abstract

A loop-mediated isothermal amplification (LAMP) assay using six primers targeting a highly conserved region of the B2L gene has been developed to diagnose orf virus. The assay produces a ladder-like pattern of products on an agarose gel that can be specifically digested with BsrGI enzyme. The sensitivity of the LAMP assay, which was determined to be a single copy of the standard plasmid, was 100 fold and 10 fold higher than PCR and nested PCR, respectively; furthermore, no cross-reactivity was founded with the other tested viruses. By staining the products directly in the tube with PicoGreen or ethidium bromide, the products can be visualized with a similar sensitivity as by gel electrophoresis. Clinical samples were tested using PCR, nested PCR and LAMP assay and the positive rates were 60%, 70% and 70%, respectively. The LAMP assay allows easy, rapid, accurate and sensitive detection of infection with orf virus and is especially applicable in a resource-limited situation.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • DNA Primers / genetics
  • Ecthyma, Contagious / diagnosis*
  • Genes, Viral
  • Goats
  • Molecular Sequence Data
  • Nucleic Acid Amplification Techniques / methods*
  • Orf virus / genetics
  • Orf virus / isolation & purification*
  • Sensitivity and Specificity
  • Skin / virology

Substances

  • DNA Primers