Structure of propeller-type parallel-stranded RNA G-quadruplexes, formed by human telomeric RNA sequences in K+ solution

J Am Chem Soc. 2009 Feb 25;131(7):2570-8. doi: 10.1021/ja806592z.

Abstract

Very recent studies showed that mammalian telomeres were transcribed into telomeric-repeat-containing RNAs and suggested that these RNA molecules were biologically important. Here we report on a structural study of RNA G-quadruplexes formed by human telomeric RNA sequences in K(+) solution. Our data indicated that these sequences formed propeller-type parallel-stranded RNA G-quadruplexes. We have determined the NMR-based solution structure of a dimeric propeller-type RNA G-quadruplex formed by the 12-nt human telomeric RNA sequence r(UAGGGUUAGGGU). We also observed the stacking of two such propeller-type G-quadruplex blocks for the 10-nt human telomeric RNA sequence r(GGGUUAGGGU) and a higher-order G-quadruplex structure for the 9-nt human telomeric RNA sequence r(GGGUUAGGG). Based on these findings we proposed how higher-order structures might be formed by long telomeric RNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cations, Monovalent / chemistry
  • Circular Dichroism
  • G-Quadruplexes*
  • Humans
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Potassium / chemistry*
  • RNA / chemistry*
  • RNA / genetics
  • Repetitive Sequences, Nucleic Acid
  • Sodium / chemistry
  • Solutions
  • Telomere / chemistry*
  • Telomere / genetics

Substances

  • Cations, Monovalent
  • Solutions
  • RNA
  • Sodium
  • Potassium

Associated data

  • PDB/2KBP