Translating organellar glutamine codons: a case by case scenario?

RNA Biol. 2009 Jan-Mar;6(1):31-4. doi: 10.4161/rna.6.1.7564. Epub 2009 Jan 2.

Abstract

Aminoacyl-tRNAs are generally formed by direct attachment of an amino acid to tRNAs by aminoacyl-tRNA synthetases, but glutaminyl-tRNA (Q-tRNA) is an exception to this rule. Glutaminyl-tRNA(Gln) (Q-tRNA(Q)) is formed by this direct pathway in the eukaryotic cytosol and in a small subset of bacteria, but is formed by an indirect transamidation pathway in most bacteria and archaea. To date it is almost impossible to predict what pathway generates organellar Q-tRNA(Q) in a given eukaryote. All eukaryotic genomes sequenced so far, display a single glutaminyl-tRNA synthetase (QRS) gene which is at least responsible for the cytosolic QRS activity, as well as a gene coding for a mitochondrial ortholog of the essential GatB subunit of the tRNA-dependent amidotransferase (AdT). Indeed, QRS activity was found in protozoan mitochondria while AdT activity was characterized in plant organelles. The pathway for Q-tRNA(Q) synthesis in yeast and mammals mitochondria is still questionable.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amino Acyl-tRNA Synthetases / metabolism
  • Animals
  • Chloroplasts / metabolism
  • Codon
  • Cytosol / metabolism
  • Glutamate-tRNA Ligase / metabolism
  • Glutamine / chemistry*
  • Mitochondria / metabolism
  • Models, Biological
  • Nitrogenous Group Transferases / metabolism
  • Plants / metabolism
  • RNA, Messenger / metabolism
  • RNA, Transfer / metabolism

Substances

  • Codon
  • RNA, Messenger
  • Glutamine
  • RNA, Transfer
  • Nitrogenous Group Transferases
  • glutamyl-tRNA(Gln) amidotransferase
  • Amino Acyl-tRNA Synthetases
  • Glutamate-tRNA Ligase
  • glutaminyl-tRNA synthetase