Graphical representation of proteins as four-color maps and their numerical characterization

J Mol Graph Model. 2009 Jan;27(5):637-41. doi: 10.1016/j.jmgm.2008.10.004. Epub 2008 Nov 1.

Abstract

We put forward a novel compact 2-D graphical representation of proteins based on the concept of virtual genetic code and a four-color map. The novel graphical representation uniquely represents proteins and allows one to easily and quickly visually observe and inspect similarity/dissimilarity between them. It also leads to a novel protein descriptor, a 10-dimensional vector derived from a novel structure matrix S associated with the map. The introduced numerical characterization of proteins is not only useful for their comparative study, but also for cataloguing information on a single protein. The approach is illustrated with the A chain of human insulin and the A chain of human insulin analogue glargine.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computer Graphics*
  • Humans
  • Hypoglycemic Agents / chemistry
  • Insulin / analogs & derivatives
  • Insulin / chemistry
  • Insulin / genetics
  • Insulin Glargine
  • Insulin, Long-Acting
  • Proteins / chemistry*
  • Proteins / genetics
  • Sequence Analysis, Protein / methods*

Substances

  • Hypoglycemic Agents
  • Insulin
  • Insulin, Long-Acting
  • Proteins
  • Insulin Glargine