An interferon-related gene signature for DNA damage resistance is a predictive marker for chemotherapy and radiation for breast cancer

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18490-5. doi: 10.1073/pnas.0809242105. Epub 2008 Nov 10.

Abstract

Individualization of cancer management requires prognostic markers and therapy-predictive markers. Prognostic markers assess risk of disease progression independent of therapy, whereas therapy-predictive markers identify patients whose disease is sensitive or resistant to treatment. We show that an experimentally derived IFN-related DNA damage resistance signature (IRDS) is associated with resistance to chemotherapy and/or radiation across different cancer cell lines. The IRDS genes STAT1, ISG15, and IFIT1 all mediate experimental resistance. Clinical analyses reveal that IRDS(+) and IRDS(-) states exist among common human cancers. In breast cancer, a seven-gene-pair classifier predicts for efficacy of adjuvant chemotherapy and for local-regional control after radiation. By providing information on treatment sensitivity or resistance, the IRDS improves outcome prediction when combined with standard markers, risk groups, or other genomic classifiers.

Publication types

  • Research Support, N.I.H., Extramural
  • Validation Study

MeSH terms

  • Animals
  • Antineoplastic Agents / therapeutic use*
  • Biomarkers*
  • Breast Neoplasms / drug therapy*
  • Breast Neoplasms / radiotherapy*
  • Cell Line, Tumor
  • Chemotherapy, Adjuvant
  • DNA Damage / genetics*
  • Humans
  • Interferons / physiology*
  • Mice
  • Oligonucleotide Array Sequence Analysis
  • Prognosis

Substances

  • Antineoplastic Agents
  • Biomarkers
  • Interferons