Micropatterning for quantitative analysis of protein-protein interactions in living cells

Nat Methods. 2008 Dec;5(12):1053-60. doi: 10.1038/nmeth.1268. Epub 2008 Nov 9.

Abstract

We present a method to identify and characterize interactions between a fluorophore-labeled protein ('prey') and a membrane protein ('bait') in live mammalian cells. Cells are plated on micropatterned surfaces functionalized with antibodies to the bait extracellular domain. Bait-prey interactions are assayed through the redistribution of the fluorescent prey. We used the method to characterize the interaction between human CD4, the major co-receptor in T-cell activation, and human Lck, the protein tyrosine kinase essential for early T-cell signaling. We measured equilibrium associations by quantifying Lck redistribution to CD4 micropatterns and studied interaction dynamics by photobleaching experiments and single-molecule imaging. In addition to the known zinc clasp structure, the Lck membrane anchor in particular had a major impact on the Lck-CD4 interaction, mediating direct binding and further stabilizing the interaction of other Lck domains. In total, membrane anchorage increased the interaction lifetime by two orders of magnitude.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biological Assay / methods*
  • Cell Membrane / metabolism*
  • Membrane Proteins / metabolism*
  • Microscopy, Fluorescence / methods*
  • Protein Interaction Mapping / methods*
  • Surface Properties

Substances

  • Membrane Proteins