Base sequence discrimination by zinc-finger DNA-binding domains

Nature. 1991 Jan 10;349(6305):175-8. doi: 10.1038/349175a0.

Abstract

Zinc fingers constitute important eukaryotic DNA-binding domains, being present in many transcription factors. The Cys2/His2 zinc-finger class has conserved motifs of 28-30 amino acids which are usually present as tandem repeats. The structure of a Cys2/His2 zinc finger has been determined by nuclear magnetic resonance, but details of its interaction with DNA were not established. Here we identify amino acids governing DNA-binding specificity using in vitro directed mutagenesis guided by similarities between the zinc fingers of transcription factors Sp1 and Krox-20. Krox-20 is a serum-inducible transcription activator which is possibly involved in the regulation of hindbrain development; it contains three zinc fingers similar to those of Sp1 and binds to a 9-base-pair target sequence which is related to that of Sp1. Our results show that each finger spans three nucleotides and indicate two positions in Krox-20 zinc fingers that are important for base-pair selectivity. Modelling with molecular graphics suggests that these residues could bind directly with the bases and that other amino acid-base contacts are also possible.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Computer Graphics
  • DNA-Binding Proteins / metabolism*
  • Drosophila melanogaster
  • Early Growth Response Protein 2
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Protein Conformation
  • Sp1 Transcription Factor / metabolism*
  • Structure-Activity Relationship
  • Transcription Factors / metabolism*
  • Zinc Fingers*

Substances

  • DNA-Binding Proteins
  • Early Growth Response Protein 2
  • Sp1 Transcription Factor
  • Transcription Factors