High-throughput assays probing protein-RNA interactions of eukaryotic translation initiation factors

Anal Biochem. 2009 Jan 1;384(1):180-8. doi: 10.1016/j.ab.2008.09.037. Epub 2008 Sep 30.

Abstract

Protein-RNA interactions are involved in all facets of RNA biology. The identification of small molecules that selectively block such bimolecular interactions could provide insight into previously unexplored steps of gene regulation. Such is the case for regulation of eukaryotic protein synthesis where interactions between messenger RNA (mRNA) and several eukaryotic initiation factors govern the recruitment of 40S ribosomes (and associated factors) to mRNA templates during the initiation phase. We have designed simple fluorescence polarization-based high-throughput screening assays that query the binding of several translation factors to RNA and found that the mixed inhibitor p-chloromercuribenzoate interferes with poly(A) binding protein-RNA interaction.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Eukaryotic Initiation Factors / analysis
  • Eukaryotic Initiation Factors / metabolism*
  • Fluorescence Polarization / methods*
  • Humans
  • Poly(A)-Binding Proteins / metabolism
  • RNA / analysis
  • RNA / metabolism*
  • p-Chloromercuribenzoic Acid / chemistry

Substances

  • Eukaryotic Initiation Factors
  • Poly(A)-Binding Proteins
  • p-Chloromercuribenzoic Acid
  • RNA