This study presents a full-scale performance of a natural treatment system (NTS) facility in Taiwan with nearly 2 years of observations. The study site, composed of several treatment ponds in series, was designed primarily to reduce polluted stormwater runoff from tea gardens and partially to untreated domestic wastewater from nearby villages. Thus, both nonpoint source and point source pollution are treated in this system. From 28 field samplings in 2006-2007, the NTS site shows satisfactory treatment performance and the effluent water quality is significantly improved. Seven of the 28 sampling events are storm events (nonpoint source pollution) and the remainder are from regular monitoring (point source pollution). The average volume of influent and effluent is 533 CMD and 196 CMD, respectively. In order to determine the removal efficiency, several assessment measures are employed in an attempt to obtain unbiased conclusions. They are removal rate (RR), efficiency rate (ER), summation of loads (SOL), flux rate (FR), and effluent probability method (EPM). The average percent removal efficiency of NH(3)-N is 53.5-75.2% and of TP is 59.0-84.7%, in which the highest result is calculated by SOL method and the lowest rate is obtained from RR. In FR evaluation, larger treatment capacity for NH(3)-N than for TP is provided in the site and the average FR is respectively 0.230 g/m(2) day and 0.017 g/m(2) day. Of the methods examined, EPM is the only method capable of illustrating data distribution. Finally, recommendations on the usefulness of these measures are summarized to facilitate the understandings of NTS performance evaluations.