Nonsense-mediated decay: paving the road for genome diversification

Bioessays. 2008 Oct;30(10):926-8. doi: 10.1002/bies.20825.

Abstract

The expression of protein-encoding genes is a complex process culminating in the production of mature mRNA and its translation by the ribosomes. The production of a mature mRNA involves an intricate series of processing steps. The majority of eukaryotic protein-encoding genes contain intron sequences that disrupt the protein-encoding frame, and hence have to be removed from immature mRNA prior to translation into protein. The mechanism involved in the selection of correct splice sites is incompletely understood. A considerable body of evidence suggests that the splicing machinery has suboptimal efficiency and fidelity leading to substantial processing inaccuracy. Here we discuss a recently published article that extends observations that cells rely on nonsense-mediated mRNA decay (NMD) to compensate for such suboptimal processing accuracy. Intriguingly these authors provide evidence for a strong selective pressure in favour of premature termination of mRNA translation in the event of intron retention. The analysis presented implies a positive role of NMD in transcript diversification through alternative splicing and suggest that this ancient surveillance mechanism may have co-evolved with intron acquisition born from the need for quality control of splicing patterns.

MeSH terms

  • Codon, Nonsense*
  • Evolution, Molecular
  • Genome*
  • Introns / genetics
  • Protein Biosynthesis / genetics
  • RNA Splicing*
  • RNA Stability / genetics*
  • RNA, Messenger / genetics*
  • Selection, Genetic

Substances

  • Codon, Nonsense
  • RNA, Messenger