Analysis of TPI gene promoter variation in three sub-Saharan Africa population samples

Am J Hum Biol. 2009 Jan-Feb;21(1):118-20. doi: 10.1002/ajhb.20819.

Abstract

Population samples from Angola, Mozambique, and S. Tomé e Príncipe were screened for the TPI gene promoter variants -5A-->G, -8G-->A and -24T-->G. Three haplotypes were identified in the three populations: the haplotype -5A-8G-24T (average frequency 65.3%) and two less common haplotypes -5G-8G-24T (average frequency 24.7%) and -5G-8A-24T (average frequency 10.0%). A population sample from Central Portugal showed the haplotype -5A-8G-24T in 139 chromosomes and one subject heterozygous for haplotype -5G-8A-24G. The exact test of sample differentiation among three groups of malaria-infected individuals classified according to the severity of the disease showed no significant differences. We confirmed TPI gene diversity in sub-Saharan Africa, but we could not detect any association between TPI promoter variation and a malarial protective effect. Larger scale epidemiological studies are thus required to clarify this putative mechanism of natural host defense against this worldwide public health problem.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa South of the Sahara
  • Female
  • Genetic Variation*
  • Haplotypes
  • Humans
  • Malaria / genetics
  • Male
  • Population Groups / genetics*
  • Portugal
  • Promoter Regions, Genetic / genetics
  • Triose-Phosphate Isomerase / genetics*

Substances

  • Triose-Phosphate Isomerase