NMR assignments and the identification of the secondary structure of the anti-retroviral cytidine deaminase

Nucleic Acids Symp Ser (Oxf). 2008:(52):183-4. doi: 10.1093/nass/nrn093.

Abstract

APOBEC3G (apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3G) is known to have a role in intrinsic cellular immunity against human immunodeficiency virus type1 (HIV-1). The antiretroviral activity of APOBEC3G (APO3G) is associated with the hypermutation of viral DNA through cytidine deamination. APO3G contains two cytidine deaminase domains that are characterised by highly conserved zinc-coordinating motif. It is known that only the C-terminal domain of APO3G (c-APO3G) has the catalytic activity. To shed light on the molecular mechanism of action by which APO3G inactivates HIV-1, we have undertaken the structural and binding studies by NMR. Here, we show the achievement of backbone assignments of c-APO3G and the identification of the secondary structure deduced from chemical shift index (CSI) and NOE data.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • APOBEC-3G Deaminase
  • Cytidine Deaminase / chemistry*
  • Humans
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Structure, Secondary
  • Structural Homology, Protein

Substances

  • APOBEC-3G Deaminase
  • APOBEC3G protein, human
  • Cytidine Deaminase