Full-length genome sequence of avain paramyxovirus type 4 isolated from a mallard duck

Virus Genes. 2008 Dec;37(3):342-50. doi: 10.1007/s11262-008-0267-4. Epub 2008 Sep 3.

Abstract

Avian paramyxovirus (APMV) consists of nine serotypes, APMV-1 through -9, of which only APMV-1 and APMV-6 have been fully sequenced. Here, we present the complete 15,054 nt RNA genome of APMV-4 isolated from a mallard duck, which conformed to the "rule of six." The APMV-4 genome had six transcriptional units in the order 3'-NP-P/V-M-F-HN-L-5', which coded for the nucleocapsid (N), phospho- (P), matrix (M), fusion (F), hemagglutinin-neuraminidase (HN), and large (L) proteins. Similar to APMV-1 but unlike APMV-6, APMV-4 lacked a small hydrophobic protein. The leader and trailer sequences were 55 and 17 nt in length, respectively, and the 12 nt-terminal regions of both ends of the APMV-4 genome were complementary. Using phylogenetic analysis, APMV-4 was classified as a member of the genus Avulavirus, and was more closely related to APMV-1 than to APMV-2 or APMV-6. These results may help establish the taxonomic position of Paramyxoviridae, Avulavirus members.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Animals, Wild / virology*
  • Avulavirus / chemistry
  • Avulavirus / classification
  • Avulavirus / genetics*
  • Avulavirus / isolation & purification*
  • Base Sequence
  • Ducks / virology*
  • Genome, Viral*
  • Molecular Sequence Data
  • Paramyxovirinae / classification
  • Paramyxovirinae / genetics
  • Phylogeny
  • Sequence Alignment
  • Viral Proteins / chemistry
  • Viral Proteins / genetics

Substances

  • Viral Proteins