Pseudoxanthomonas sacheonensis sp. nov., isolated from BTEX-contaminated soil in Korea, transfer of Stenotrophomonas dokdonensis Yoon et al. 2006 to the genus Pseudoxanthomonas as Pseudoxanthomonas dokdonensis comb. nov. and emended description of the genus Pseudoxanthomonas

Int J Syst Evol Microbiol. 2008 Sep;58(Pt 9):2235-40. doi: 10.1099/ijs.0.65678-0.

Abstract

A Gram-negative, strictly aerobic, rod-shaped bacterium, designated strain BD-c54(T), was isolated from BTEX (benzene, toluene, ethylbenzene and xylenes)-contaminated soil in Sacheon, Korea. Growth of strain BD-c54(T) was observed at 15-35 degrees C (optimum 25-30 degrees C) and pH 6.0-9.5 (optimum pH 7.0-8.0). The predominant fatty acids were iso-C(15:0), iso-C(17:1)omega9c, iso-C(11:0) 3-OH, iso-C(16:0), iso-C(11:0) and iso-C(17:0). The strain contained large amounts of phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol and a small amount of an unknown amino-group-containing polar lipid as polar lipids. The major quinone was ubiquinone-8 (Q-8) and the G+C content of the genomic DNA was 67.5 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain BD-c54(T) formed a tight phylogenetic lineage with Pseudoxanthomonas yeongjuensis GR12-1(T) within the genus Pseudoxanthomonas and was most closely related to P. yeongjuensis GR12-1(T) and [Stenotrophomonas] dokdonensis DS-16(T), with 98.3 and 96.6% 16S rRNA gene sequence similarity, respectively. The DNA-DNA relatedness between strain BD-c54(T) and P. yeongjuensis GR12-1(T) was 24.5%. On the basis of chemotaxonomic data and molecular properties, strain BD-c54(T) represents a novel species within the genus Pseudoxanthomonas, for which the name Pseudoxanthomonas sacheonensis sp. nov. is proposed. The type strain is BD-c54(T) (=KCTC 22080(T) =DSM 19373(T)). In addition, the transfer of Stenotrophomonas dokdonensis to Pseudoxanthomonas as Pseudoxanthomonas dokdonensis comb. nov. and an emended description of the genus Pseudoxanthomonas are proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Genes, rRNA
  • Hydrogen-Ion Concentration
  • Korea
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phospholipids / analysis
  • Phylogeny
  • Quinones / analysis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*
  • Soil Pollutants
  • Temperature
  • Xanthomonadaceae / classification*
  • Xanthomonadaceae / genetics
  • Xanthomonadaceae / isolation & purification*
  • Xanthomonadaceae / physiology

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Phospholipids
  • Quinones
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Soil Pollutants

Associated data

  • GENBANK/EF575564