Developing fixed-parameter algorithms to solve combinatorially explosive biological problems

Methods Mol Biol. 2008:453:395-421. doi: 10.1007/978-1-60327-429-6_21.

Abstract

Fixed-parameter algorithms can efficiently find optimal solutions to some computationally hard (NP-hard) problems. This chapter surveys five main practical techniques to develop such algorithms. Each technique is circumstantiated by case studies of applications to biological problems. It also presents other known bioinformatics-related applications and gives pointers to experimental results.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Computational Biology / methods*
  • Models, Genetic