The T body, a new cytoplasmic RNA granule in Saccharomyces cerevisiae

Mol Cell Biol. 2008 Oct;28(19):6022-32. doi: 10.1128/MCB.00684-08. Epub 2008 Aug 4.

Abstract

A large share of mRNA processing and packaging events occurs cotranscriptionally. To explore the hypothesis that transcription defects may affect mRNA fate, we analyzed poly(A)(+) RNA distribution in Saccharomyces cerevisiae strains harboring mutations in Rpb1p, the largest subunit of RNA polymerase II. In certain rpb1 mutants, a poly(A)(+) RNA granule, distinct from any known structure, strongly accumulated in a confined space of the cytoplasm. RNA and protein expressed from Ty1 retrovirus-like elements colocalized with this new granule, which we have consequently named the T body. A visual screen revealed that the deletion of most genes with proposed functions in Ty1 biology unexpectedly does not alter T-body levels. In contrast, the deletion of genes encoding the Mediator transcription initiation factor subunits Srb2p and Srb5p as well as the Ty1 transcriptional regulator Spt21p greatly enhances T-body formation. Our data disclose a new cellular body putatively involved in the assembly of Ty1 particles and suggest that the cytoplasmic fate of mRNA can be affected by transcription initiation events.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cytoplasmic Granules / chemistry*
  • Cytoplasmic Granules / genetics
  • Cytoplasmic Granules / metabolism
  • Fungal Proteins / analysis
  • RNA, Fungal / analysis
  • RNA, Fungal / genetics*
  • RNA, Fungal / metabolism
  • RNA, Messenger / metabolism
  • Retroelements*
  • Saccharomyces cerevisiae / cytology
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / genetics
  • Transcription Factors / genetics

Substances

  • Fungal Proteins
  • RNA, Fungal
  • RNA, Messenger
  • Retroelements
  • SPT21 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors
  • p1 protein, yeast