Nucleosome switches

Phys Rev Lett. 2008 Jun 6;100(22):228105. doi: 10.1103/PhysRevLett.100.228105. Epub 2008 Jun 6.

Abstract

We present a statistical-mechanical model for the positioning of nucleosomes along genomic DNA molecules as a function of the strength of the binding potential and the chemical potential of the nucleosomes. We show that a significant section of the DNA is composed of two-level nucleosome switching regions where the nucleosome distribution undergoes a localized, first-order transition. The location of the nucleosome switches shows a strong correlation with the location of gene-regulation regions.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • DNA / chemistry*
  • DNA / genetics*
  • Models, Genetic*
  • Nucleic Acid Conformation
  • Nucleosomes / chemistry*
  • Nucleosomes / genetics*

Substances

  • Nucleosomes
  • DNA