Glycosidase inhibition by macrolide antibiotics elucidated by STD-NMR spectroscopy

Chem Biol. 2008 Jul 21;15(7):739-49. doi: 10.1016/j.chembiol.2008.05.017.

Abstract

A glycosynthase approach was attempted to glycodiversify macrolide antibiotics, using DesR, a family-3 retaining beta-glucosidase involved in the self-resistance mechanism of methymycin production. STD-NMR was used to probe enzyme-substrate interactions. Analysis of competitive STD-NMR experiments between erythromycin A and a chromogenic substrate (pNP-beta-d-glucose) with the hydrolytically inactive nucleophile mutants led us to discover a family of unprecedented glycosidase inhibitors. Analysis of kinetic data with wild-type DesR determined that erythromycin is a competitive inhibitor of the glucosidase (IC50 = 2.8 +/- 0.3 microM and Ki = 2 +/- 0.2 microM) with respect to the hydrolysis of pNP-beta-d-glucose. Comparable inhibitory data was obtained for clarithromycin; however, the inhibitory effect of azithromycin was weak and no significant inhibition was observed with methymycin or d-desosamine. This report documents significant inhibition of glycosidases by macrolide antibiotics and provides insight into the design of novel glycosidase inhibitors based on the macrolactone ring of macrolide antibiotics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Sugars / pharmacology
  • Anti-Bacterial Agents / pharmacology*
  • Dose-Response Relationship, Drug
  • Erythromycin / pharmacology
  • Glucose / chemistry
  • Glycoside Hydrolases / antagonists & inhibitors*
  • Glycoside Hydrolases / chemistry
  • Hydrogen-Ion Concentration
  • Hydrolysis
  • Inhibitory Concentration 50
  • Kinetics
  • Macrolides / pharmacology*
  • Magnetic Resonance Spectroscopy / methods*
  • Models, Chemical
  • Molecular Conformation

Substances

  • Amino Sugars
  • Anti-Bacterial Agents
  • Macrolides
  • methymycin
  • desosamine
  • Erythromycin
  • Glycoside Hydrolases
  • Glucose