Characterization of a cryptic plasmid pM4 from Lactobacillus plantarum M4

FEMS Microbiol Lett. 2008 Aug;285(2):183-7. doi: 10.1111/j.1574-6968.2008.01229.x. Epub 2008 Jun 28.

Abstract

A cryptic plasmid from Lactobacillus plantarum M4 isolated from fresh milk, designated as pM4, was sequenced and characterized. It was 3320 bp in length with a G+C content of 38.73 mol%. The plasmid pM4 was predicted to encode three putative ORFs, in which ORF1 shared 99% and 98% homology, respectively, with the Rep proteins of reported plasmids pWCFS101 and pF8801, members of the rolling circle replication (RCR) pC194 family. Sequence analysis revealed a typical pC194 family double strand origin (dso) and a putative single strand origin (sso) located upstream of the rep gene. Mung bean nuclease analysis and Southern hybridization confirmed the presence of single-stranded DNA (ssDNA) intermediates, suggesting that pM4 belongs to the RCR pC194 family. Accumulation of ssDNA in rifampicin-treated strains implied that the host-encoded RNA polymerase was involved in the conversion of ssDNA to double-stranded DNA. Furthermore, the relative copy number of pM4 was estimated to be about 25 in each cell by real-time PCR. The new RCR plasmid would be valuable in constructing cloning vectors for application in the food industry.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacterial Proteins / genetics
  • Base Composition
  • Base Sequence
  • Blotting, Southern
  • DNA Helicases / genetics
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / genetics
  • DNA, Single-Stranded / metabolism
  • DNA-Directed RNA Polymerases / metabolism
  • Gene Dosage
  • Genetic Vectors
  • Lactobacillus plantarum / genetics*
  • Lactobacillus plantarum / isolation & purification
  • Milk / microbiology
  • Molecular Sequence Data
  • Open Reading Frames
  • Plasmids*
  • Replication Origin
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Single-Strand Specific DNA and RNA Endonucleases / metabolism
  • Trans-Activators / genetics

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • DNA, Single-Stranded
  • Trans-Activators
  • replication initiator protein
  • DNA-Directed RNA Polymerases
  • Single-Strand Specific DNA and RNA Endonucleases
  • DNA Helicases

Associated data

  • GENBANK/EF690364