Characterizing protein-protein interactions by sedimentation velocity analytical ultracentrifugation

Curr Protoc Immunol. 2008 May:Chapter 18:18.15.1-18.15.39. doi: 10.1002/0471142735.im1815s81.

Abstract

This unit introduces the basic principles and practice of sedimentation velocity analytical ultracentrifugation for the study of reversible protein interactions, such as the characterization of self-association, heterogeneous association, multi-protein complexes, binding stoichiometry, and the determination of association constants. The analytical tools described include sedimentation coefficient and molar mass distributions, multi-signal sedimentation coefficient distributions, Gilbert-Jenkins theory, different forms of isotherms, and global Lamm equation modeling. Concepts for the experimental design are discussed, and a detailed step-by-step protocol guiding the reader through the experiment and the data analysis is available as an Internet resource.

MeSH terms

  • Animals
  • Binding Sites
  • Buffers
  • Humans
  • Kinetics
  • Models, Chemical
  • Multiprotein Complexes / chemistry*
  • Multiprotein Complexes / metabolism
  • Protein Binding
  • Protein Interaction Mapping*
  • Proteins / chemistry*
  • Proteins / metabolism
  • Temperature
  • Ultracentrifugation / methods*

Substances

  • Buffers
  • Multiprotein Complexes
  • Proteins