Sequence file format conversion with command-line readseq

Curr Protoc Bioinformatics. 2003 Feb:Appendix 1:Appendix 1E. doi: 10.1002/0471250953.bia01es00.

Abstract

One of the major challenges in using bioinformatics software is that there are a wide variety of sequence formats, e.g., GenBank, EMBL, and FASTA. It is often the case that a sequence or a set of sequences is in one format but is needed in another. This unit offers a solution to this problem--Readseq. Readseq is a program that can read and write 18 different formats.

MeSH terms

  • Database Management Systems*
  • Databases, Genetic*
  • Information Storage and Retrieval / methods*
  • Internet
  • Programming Languages*
  • Sequence Analysis / methods*
  • User-Computer Interface*