Functional interaction between the Fab-7 and Fab-8 boundaries and the upstream promoter region in the Drosophila Abd-B gene

Mol Cell Biol. 2008 Jun;28(12):4188-95. doi: 10.1128/MCB.00229-08. Epub 2008 Apr 21.

Abstract

Boundary elements have been found in the regulatory region of the Drosophila melanogaster Abdominal-B (Abd-B) gene, which is subdivided into a series of iab domains. The best-studied Fab-7 and Fab-8 boundaries flank the iab-7 enhancer and isolate it from the four promoters regulating Abd-B expression. Recently binding sites for the Drosophila homolog of the vertebrate insulator protein CTCF (dCTCF) were identified in the Fab-8 boundary and upstream of Abd-B promoter A, with no binding of CTCF to the Fab-7 boundary being detected either in vivo or in vitro. Taking into account the inability of the yeast GAL4 activator to stimulate the white promoter when its binding sites are separated by a 5-kb yellow gene, we have tested the functional interactions between the Fab-7 and Fab-8 boundaries and between these boundaries and the upstream promoter A region containing a dCTCF binding site. It has been found that dCTCF binding sites are essential for pairing between two Fab-8 insulators. However, a strong functional interaction between the Fab-7 and Fab-8 boundaries suggests that additional, as yet unidentified proteins are involved in long-distance interactions between them. We have also shown that Fab-7 and Fab-8 boundaries effectively interact with the upstream region of the Abd-B promoter.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Animals, Genetically Modified
  • Binding Sites
  • Chromatin / metabolism
  • Drosophila Proteins / chemistry*
  • Drosophila Proteins / genetics
  • Drosophila melanogaster / metabolism*
  • Enhancer Elements, Genetic
  • Homeodomain Proteins / chemistry*
  • Homeodomain Proteins / genetics*
  • Models, Biological
  • Models, Genetic
  • Plasmids / metabolism
  • Promoter Regions, Genetic*
  • Protein Binding
  • Protein Structure, Tertiary
  • Transcription Factors / metabolism

Substances

  • Abd-B proteins, Drosophila
  • Chromatin
  • Drosophila Proteins
  • Homeodomain Proteins
  • Transcription Factors