A new species of trematode, Pleurogonius tortugueroi n. sp. (Digenea: Pronocephalidae) is described from the lower intestine of green sea turtles (Chelonia mydas) from Tortuguero National Park, Costa Rica. The new species differs from all other species of Pleurogonius by having a short oesophagus and oval testes close to lateral posterior limit of the body. It differs from all other species, except P. malaclemys Hunter 1961, by having an ovary between the testes; moreover the latter species is a parasite of freshwater turtles. All others members of the genus have a long oesophagus, testes placed to some distance from the posterior end, and the ovary is pretesticular. The new species appears most closely related to P. linearis Looss, 1901 but differs from it by having a different body shape, lappets of the head collar close at the cecal bifurcation level, a longer vitellarian field, different testis shape and position, ovary intertesticular, and different egg size.