The mechanism of ureido-pyrimidinone:2,7-diamido-naphthyridine complexation and the presence of kinetically controlled pathways in multicomponent hydrogen-bonded systems

J Am Chem Soc. 2008 Apr 23;130(16):5479-86. doi: 10.1021/ja709971y. Epub 2008 Mar 29.

Abstract

The kinetics of association of ureido-pyrimidinone (U) dimers, present either in the 4[1H]-keto form or in the pyrimidin-4-ol form, with 2,7-diamido-1,8-naphthyridine (N) into a complementary heterodimer have been investigated. The formation of heterodimers with 2,7-diamido-1,8-naphthyridine from pyrimidin-4-ol dimers is much faster than from 4[1H]-pyrimidinone dimers. Using a combination of simple measurements and simulations, evidence for a bimolecular tautomerization step is presented. Finally, the acquired kinetic knowledge of the different pathways leading from ureido-pyrimidinone homodimers to ureido-pyrimidinone:diamido-naphthyridine (U:N) heterodimers allows the prediction and observation of kinetically determined ureido-pyrimidinone heterodimers which slowly convert back to the corresponding homodimers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Diamide / analogs & derivatives*
  • Dimerization
  • Hydrogen Bonding
  • Kinetics
  • Naphthyridines / chemistry*
  • Pyrimidinones / chemistry*
  • Urea / analogs & derivatives*

Substances

  • Naphthyridines
  • Pyrimidinones
  • Diamide
  • Urea