Identification of breast cancer peptide epitopes presented by HLA-A*0201

J Proteome Res. 2008 Apr;7(4):1445-57. doi: 10.1021/pr700761w. Epub 2008 Mar 18.

Abstract

Cellular immune mechanisms detect and destroy cancerous and infected cells via the human leukocyte antigen (HLA) class I molecules that present peptides of intracellular origin on the surface of all nucleated cells. The identification of novel, tumor-specific epitopes is a critical step in the development of immunotherapeutics for breast cancer. To directly identify peptide epitopes unique to cancerous cells, secreted human class I HLA molecules (sHLA) were constructed by deletion of the transmembrane and cytoplasmic domain of HLA A*0201. The resulting sHLA-A*0201 was transferred and expressed in breast cancer cell lines MCF-7, MDA-MB-231, and BT-20 as well as in the immortal, nontumorigenic cell line MCF10A. Stable transfectants were seeded into bioreactors for production of > 25 mg of sHLA-A*0201. Peptides eluted from affinity purified sHLA were analyzed by mass spectroscopy. Comparative analysis of HLA-A*0201 peptides revealed 5 previously uncharacterized epitopes uniquely presented on breast cancer cells. These peptides were derived from intracellular proteins with either well-defined or putative roles in breast cancer development and progression: Cyclin Dependent Kinase 2 (Cdk2), Ornithine Decarboxylase (ODC1), Kinetochore Associated 2 (KNTC2 or HEC1), Macrophage Migration Inhibitory Factor (MIF), and Exosome Component 6 (EXOSC6). Cellular recognition of the MIF, KNTC2, EXOSC6, and Cdk2 peptides by circulating CD8+ cells was demonstrated by tetramer staining and IFN-gamma ELISPOT. The identification and characterization of peptides unique to the class I of breast cancer cells provide putative targets for the development of immune diagnostic tools and therapeutics.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Breast Neoplasms / immunology*
  • Breast Neoplasms / metabolism
  • Breast Neoplasms / pathology
  • CD8-Positive T-Lymphocytes / immunology
  • CD8-Positive T-Lymphocytes / metabolism
  • Cell Line, Tumor
  • Chromatography, High Pressure Liquid
  • Cyclin-Dependent Kinase 2 / immunology
  • Cyclin-Dependent Kinase 2 / metabolism
  • Cytoskeletal Proteins
  • Epitopes, T-Lymphocyte / analysis*
  • Epitopes, T-Lymphocyte / immunology
  • Epitopes, T-Lymphocyte / isolation & purification
  • Exoribonucleases / immunology
  • Exoribonucleases / metabolism
  • Female
  • HLA-A Antigens / chemistry
  • HLA-A Antigens / immunology*
  • HLA-A2 Antigen
  • Humans
  • Interferon-gamma / metabolism
  • Intramolecular Oxidoreductases / immunology
  • Intramolecular Oxidoreductases / metabolism
  • Leukocytes, Mononuclear / immunology
  • Leukocytes, Mononuclear / metabolism
  • Macrophage Migration-Inhibitory Factors / immunology
  • Macrophage Migration-Inhibitory Factors / metabolism
  • Mass Spectrometry
  • Nuclear Proteins / immunology
  • Nuclear Proteins / metabolism
  • Ornithine Decarboxylase / immunology
  • Ornithine Decarboxylase / metabolism

Substances

  • Cytoskeletal Proteins
  • Epitopes, T-Lymphocyte
  • HLA-A Antigens
  • HLA-A*02:01 antigen
  • HLA-A2 Antigen
  • Macrophage Migration-Inhibitory Factors
  • NDC80 protein, human
  • Nuclear Proteins
  • Interferon-gamma
  • CDK2 protein, human
  • Cyclin-Dependent Kinase 2
  • Exoribonucleases
  • Ornithine Decarboxylase
  • Intramolecular Oxidoreductases
  • MIF protein, human