Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules

Org Lett. 2008 Apr 17;10(8):1561-4. doi: 10.1021/ol702920e. Epub 2008 Mar 14.

Abstract

A new fluorogenic cyanine dye was synthesized and found to have low fluorescence quantum yield in fluid solution and in the presence of double-stranded DNA but 80-fold enhanced fluorescence in viscous glycerol solution. An RNA aptamer selected for binding to the new dye exhibits K(d) = 87 nM and 60-fold fluorescence enhancement. The dye-aptamer pair is a fluoromodule that can be incorporated into fluorescent sensors and labels.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carbocyanines / chemical synthesis*
  • Carbocyanines / chemistry
  • Fluorine / chemistry*
  • RNA / chemistry*
  • Spectrometry, Fluorescence

Substances

  • Carbocyanines
  • Fluorine
  • RNA