Direct linking of metabolism and gene expression in the proline utilization A protein from Escherichia coli

Amino Acids. 2008 Nov;35(4):711-8. doi: 10.1007/s00726-008-0053-6. Epub 2008 Mar 7.

Abstract

The control of gene expression by enzymes provides a direct pathway for cells to respond to fluctuations in metabolites and nutrients. One example is the proline utilization A (PutA) protein from Escherichia coli. PutA is a membrane-associated enzyme that catalyzes the oxidation of L: -proline to glutamate using a flavin containing proline dehydrogenase domain and a NAD(+) dependent Delta(1)-pyrroline-5-carboxylate dehydrogenase domain. In some Gram-negative bacteria such as E. coli, PutA is also endowed with a ribbon-helix-helix DNA-binding domain and acts as a transcriptional repressor of the proline utilization genes. PutA switches between transcriptional repressor and enzymatic functions in response to proline availability. Molecular insights into the redox-based mechanism of PutA functional switching from recent studies are reviewed. In addition, new results from cell-based transcription assays are presented which correlate PutA membrane localization with put gene expression levels. General membrane localization of PutA, however, is not sufficient to activate the put genes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Bacterial Proteins / physiology*
  • Cell Membrane / metabolism
  • DNA / chemistry
  • Escherichia coli / metabolism*
  • Gene Expression Regulation, Bacterial*
  • Glutamic Acid / chemistry
  • Kinetics
  • Membrane Proteins / genetics*
  • Membrane Proteins / metabolism
  • Membrane Proteins / physiology*
  • Models, Biological
  • Oxidation-Reduction
  • Oxygen / chemistry
  • Proline / chemistry
  • Protein Conformation
  • Protein Structure, Tertiary
  • Surface Plasmon Resonance
  • Transcription, Genetic

Substances

  • Bacterial Proteins
  • Membrane Proteins
  • PutA protein, Bacteria
  • Glutamic Acid
  • DNA
  • Proline
  • Oxygen