Identification of an intronic splicing enhancer essential for the inclusion of FGFR2 exon IIIc

J Biol Chem. 2008 Apr 11;283(15):10058-67. doi: 10.1074/jbc.M800087200. Epub 2008 Feb 6.

Abstract

The ligand specificity of fibroblast growth factor receptor 2 (FGFR2) is determined by the alternative splicing of exons 8 (IIIb) or 9 (IIIc). Exon IIIb is included in epithelial cells, whereas exon IIIc is included in mesenchymal cells. Although a number of cis elements and trans factors have been identified that play a role in exon IIIb inclusion in epithelium, little is known about the activation of exon IIIc in mesenchyme. We report here the identification of a splicing enhancer required for IIIc inclusion. This 24-nucleotide (nt) downstream intronic splicing enhancer (DISE) is located within intron 9 immediately downstream of exon IIIc. DISE was able to activate the inclusion of heterologous exons rat FGFR2 IIIb and human beta-globin exon 2 in cell lines from different tissues and species and also in HeLa cell nuclear extracts in vitro. DISE was capable of replacing the intronic activator sequence 1 (IAS1), a known IIIb splicing enhancer and vice versa. This fact, together with the requirement for DISE to be close to the 5'-splice site and the ability of DISE to promote binding of U1 snRNP, suggested that IAS1 and DISE belong to the same class of cis-acting elements.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Alternative Splicing / physiology*
  • Animals
  • Enhancer Elements, Genetic / physiology*
  • Epithelium / metabolism
  • Exons / physiology*
  • Globins / biosynthesis
  • Globins / genetics
  • HeLa Cells
  • Humans
  • Mesoderm / metabolism
  • Mice
  • Organ Specificity / physiology
  • Rats
  • Receptor, Fibroblast Growth Factor, Type 2 / biosynthesis*
  • Receptor, Fibroblast Growth Factor, Type 2 / genetics
  • Ribonucleoprotein, U1 Small Nuclear / genetics
  • Ribonucleoprotein, U1 Small Nuclear / metabolism

Substances

  • Ribonucleoprotein, U1 Small Nuclear
  • Globins
  • FGFR2 protein, human
  • Fgfr2 protein, mouse
  • Fgfr2 protein, rat
  • Receptor, Fibroblast Growth Factor, Type 2