Purification and characterization of a novel fibrinolytic enzyme from Bacillus sp. nov. SK006 isolated from an Asian traditional fermented shrimp paste

J Agric Food Chem. 2008 Feb 27;56(4):1451-7. doi: 10.1021/jf0713410. Epub 2008 Jan 16.

Abstract

Bacillus sp. nov. SK006 producing four extracellular fibrinolytic enzymes was isolated from fermented shrimp paste, a traditional and popular Asian seasoning. One fibrinolytic enzyme was purified to homogeneity with a molecular mass of 43-46 kDa by SDS-PAGE and gel filtration chromatography. The specific activity was determined to be 11.2 units/mg using plasmin as a standard. The enzyme displayed optimal activity at 30 degrees C and pH 7.2. It was stable below 40 degrees C for 4 h between pH 5.0 and pH 11.0. Zinc ion stimulated the enzyme activity whereas Cu2+, Ca2+, Fe3+, and Hg2+ caused its inhibition. The fibrinolytic activity was strongly inhibited by PMSF and moderately inhibited by EDTA as well as PCMB. The enzyme exhibited a higher affinity toward N-Succ-Ala-Ala-Pro-Phe-pNA and was able to degrade fibrin clots either by forming active plasmin from plasminogen or by direct fibrinolysis. The N-terminal amino acid sequence was found to be AQSVPYEQPHLSQ, which is different from that of other known fibrinolytic enzymes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacillus / enzymology*
  • Chromatography, Gel
  • Electrophoresis, Polyacrylamide Gel
  • Endopeptidases / chemistry
  • Endopeptidases / isolation & purification*
  • Enzyme Activation*
  • Enzyme Inhibitors
  • Fermentation*
  • Fibrinolysin / metabolism
  • Fibrinolysis*
  • Flavoring Agents / chemistry
  • Food Microbiology*
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Molecular Weight
  • Penaeidae*
  • Plasminogen / metabolism
  • Substrate Specificity
  • Temperature

Substances

  • Enzyme Inhibitors
  • Flavoring Agents
  • Plasminogen
  • Endopeptidases
  • Fibrinolysin