DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression

Science. 2008 Jan 11;319(5860):202-6. doi: 10.1126/science.1147674.

Abstract

Modifications at the N-terminal tails of nucleosomal histones are required for efficient transcription in vivo. We analyzed how H3 histone methylation and demethylation control expression of estrogen-responsive genes and show that a DNA-bound estrogen receptor directs transcription by participating in bending chromatin to contact the RNA polymerase II recruited to the promoter. This process is driven by receptor-targeted demethylation of H3 lysine 9 at both enhancer and promoter sites and is achieved by activation of resident LSD1 demethylase. Localized demethylation produces hydrogen peroxide, which modifies the surrounding DNA and recruits 8-oxoguanine-DNA glycosylase 1 and topoisomeraseIIbeta, triggering chromatin and DNA conformational changes that are essential for estrogen-induced transcription. Our data show a strategy that uses controlled DNA damage and repair to guide productive transcription.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Cells, Cultured
  • Chromatin / metabolism
  • DNA / metabolism*
  • DNA Damage
  • DNA Glycosylases / metabolism
  • DNA Repair
  • DNA Topoisomerases, Type II / metabolism
  • DNA-Binding Proteins / metabolism
  • Enhancer Elements, Genetic
  • Estradiol / metabolism*
  • Estrogen Receptor alpha / metabolism
  • Gene Expression Regulation*
  • Genes, bcl-2
  • Guanine / analogs & derivatives
  • Guanine / metabolism
  • Histone Demethylases
  • Histones / metabolism*
  • Humans
  • Hydrogen Peroxide / metabolism
  • Lysine / metabolism
  • Methylation
  • Nucleic Acid Conformation
  • Oxidation-Reduction
  • Oxidoreductases, N-Demethylating / metabolism
  • Promoter Regions, Genetic
  • RNA Polymerase II / metabolism
  • Transcription, Genetic*

Substances

  • Chromatin
  • DNA-Binding Proteins
  • Estrogen Receptor alpha
  • Histones
  • Estradiol
  • 8-hydroxyguanine
  • Guanine
  • DNA
  • Hydrogen Peroxide
  • Histone Demethylases
  • KDM1A protein, human
  • Oxidoreductases, N-Demethylating
  • RNA Polymerase II
  • DNA Glycosylases
  • oxoguanine glycosylase 1, human
  • DNA Topoisomerases, Type II
  • Lysine