FCI: an R-based algorithm for evaluating uncertainty of absolute real-time PCR quantification

BMC Bioinformatics. 2008 Jan 10:9:13. doi: 10.1186/1471-2105-9-13.

Abstract

Background: FCI is an R code for analyzing data from real-time PCR experiments. This algorithm estimates standard curve features as well as nucleic acid concentrations and confidence intervals according to Fieller's theorem.

Results: In order to describe the features of FCI four situations were selected from real data collected during an international external quality assessment program for quantitative assays based on real-time PCR. The code generates a diagnostic figure suitable for assessing the quality of the quantification process.

Conclusion: We have provided a freeware programme using this algorithm specifically designed to increase the information content of the real-time PCR assay.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • DNA / analysis*
  • DNA / genetics*
  • Data Interpretation, Statistical
  • Programming Languages*
  • Reproducibility of Results
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sensitivity and Specificity
  • Sequence Analysis, DNA / methods*

Substances

  • DNA