Conformational studies on bombesin antagonists: CD and NMR characterization of [Thr6, Leu13 psi(CH2NH) Met14] bombesin (6-14)

Biopolymers. 1991 Oct 15;31(12):1397-408. doi: 10.1002/bip.360311206.

Abstract

The conformational flexibility of the [Thr6, Leu13 psi(CH2NH) Met14] bombesin (6-14) nonapeptide has been studied by CD and one- and two-dimensional (1D and 2D) nmr techniques. The CD and nmr parameters in different solvents and in a micellar environment (SDS) are compared with the data collected for the parent bombesin (BN) and [D-Phe12, Leu14]BN. A preliminary investigation on spantide is also reported. In particular, the results obtained from CD measurements indicate that there is a shift from random coil structures, in aqueous solutions, toward folded structures in apolar media (2,2,2-trifluoroethanol) and in a membrane-mimetic environment (40 mM SDS) for all three peptides, namely BN, [D-Phe12, Leu14]BN, and [Thr6, Leu13 psi(CH2NH) Met14]BN (6-14). Spantide, which also possesses some inhibitory activity against BN but very little sequence similarity, even in water, shows an ordered conformation. Nuclear magnetic resonance parameters such as backbone NH-alpha CH coupling constant values, amidic temperature coefficients, and the presence of only sequential nuclear Overhauser effects have not provided, so far, any clear evidence for a preferential ordered structure in the peptides studied, and this may be due to rapid exchange among different conformers in the nmr time scale.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bombesin / analogs & derivatives*
  • Bombesin / antagonists & inhibitors*
  • Bombesin / chemistry
  • Circular Dichroism
  • Magnetic Resonance Spectroscopy / methods
  • Molecular Sequence Data
  • Oligopeptides / chemistry*
  • Peptide Fragments / chemistry*
  • Protein Conformation

Substances

  • Oligopeptides
  • Peptide Fragments
  • bombesin (6-14), Thr(6)-Leu(13)-psi(CH2NH)-Met(14)-
  • Bombesin