The secretory route in eukaryotic cells has been regarded as one common pathway from the endoplasmic reticulum (ER) through the Golgi cisternae to the trans Golgi network where recognition, sorting and exit of cargo molecules are thought to occur. Morphologically, the ribosome-coated ER is observed throughout the cytoplasm, while the Golgi apparatus usually is confined to a perinuclear position in mammalian cells. However, Golgi outposts have been observed in neuronal dendrites and dispersed Golgi elements in skeletal muscle myofibers. In insects, like in Drosophila melanogaster imaginal disc cells and epidermal cells of Tobacco and Arabidopsis leafs, individual Golgi stacks are distributed throughout the cytoplasm. Golgi stacks do not only differ in their intracellular localization but also in the number of stacks from one to several hundreds. Each stack consists of closely aligned, flattened, membrane-limited cisternae. The number of cisternae in a Golgi stack is also variable, 2-3 in some ciliates, 10 in many plant cell types and up to 30 in certain euglenoids. The yeast Saccharomyces cerevisiae has a Golgi structure of minimal complexity with scattered solitary cisternae. It is assumed that the number of Golgi cisternae reflects the overall complexity of the enzymatic reactions that occur in their lumen, while the number of stacks reflects the load of macromolecules arriving at the cis side. In this review, we will focus on how the available morphological and biochemical data fit with the current view of protein sorting in the secretory pathway, particularly in polarized cells like neuronal and epithelial cells.