Synthesis and conformational studies of peptidomimetics containing a new bifunctional diketopiperazine scaffold acting as a beta-hairpin inducer

J Org Chem. 2008 Jan 18;73(2):652-60. doi: 10.1021/jo702072z. Epub 2007 Dec 13.

Abstract

A practical synthesis of a new bifunctional diketopiperazine (DKP) scaffold 1, formally derived from the cyclization of L-aspartic acid and (S)-2,3-diaminopropionic acid, is reported. DKP-1 bears a carboxylic acid and an amino functionalities in a cis relationship, which have been used to grow peptide sequences. Tetra-, penta-, and hexapeptidomimetic sequences were prepared by solution-phase peptide synthesis (Boc strategy). Conformational analysis of these derivatives was carried out by a combination of 1H NMR spectroscopy, IR spectroscopy, CD spectroscopy, and computer modeling, and reveals the formation of beta-hairpin mimics involving 10-membered and 18-membered H-bonded rings and a reverse turn of the growing peptide chain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomimetics / methods*
  • Computer Simulation
  • Crystallography, X-Ray
  • Cyclization
  • Diketopiperazines / chemical synthesis*
  • Diketopiperazines / chemistry*
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy / methods
  • Magnetic Resonance Spectroscopy / standards
  • Models, Chemical
  • Models, Molecular
  • Molecular Conformation
  • Peptides / chemical synthesis*
  • Peptides / chemistry*
  • Reference Standards
  • Stereoisomerism

Substances

  • Diketopiperazines
  • Peptides