Rhodococcus qingshengii sp. nov., a carbendazim-degrading bacterium

Int J Syst Evol Microbiol. 2007 Dec;57(Pt 12):2754-2757. doi: 10.1099/ijs.0.65095-0.

Abstract

A Gram-positive, aerobic, non-motile, mesophilic strain, djl-6(T), able to degrade carbendazim, was isolated from a carbendazim-contaminated soil sample from Jiangsu province, China. The taxonomic position of this isolate was analysed by using a polyphasic approach. Chemotaxonomic analysis including peptidoglycan type, diagnostic sugar composition, fatty acid profile, menaquinones, polar lipids and mycolic acids showed that the characteristics of strain djl-6(T) were in good agreement with those of the genus Rhodococcus. DNA-DNA hybridization showed that it had low genomic relatedness with Rhodococcus baikonurensis DSM 44587(T) (31.8 %), Rhodococcus erythropolis DSM 43066(T) (23.8 %) and Rhodococcus globerulus DSM 43954(T) (17.7 %), the three type strains to which strain djl-6(T) was most closely related based on 16S rRNA gene sequence analysis (99.78, 99.25 and 98.91 % similarity, respectively). Based on the phenotypic properties and DNA-DNA hybridization data, strain djl-6(T) (=CGMCC 1.6580(T) =KCTC 19205(T)) is proposed as the type strain of a novel Rhodococcus species, Rhodococcus qingshengii sp. nov.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis / physiology
  • Bacterial Typing Techniques
  • Benzimidazoles / metabolism*
  • Carbamates / metabolism*
  • Carbohydrates / analysis
  • China
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Genes, rRNA
  • Locomotion / physiology
  • Molecular Sequence Data
  • Mycolic Acids / analysis
  • Nucleic Acid Hybridization
  • Phospholipids / analysis
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Rhodococcus / chemistry
  • Rhodococcus / classification*
  • Rhodococcus / genetics
  • Rhodococcus / isolation & purification*
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*
  • Temperature
  • Vitamin K 2 / analysis

Substances

  • Benzimidazoles
  • Carbamates
  • Carbohydrates
  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Mycolic Acids
  • Phospholipids
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • carbendazim

Associated data

  • GENBANK/DQ090961