Sensing of nucleic acid sequences using unmodified nucleic acid as a probe

Nucleic Acids Symp Ser (Oxf). 2007:(51):281-2. doi: 10.1093/nass/nrm141.

Abstract

We present a strategy to generate a light-up fluorophore-aptamer pair. The strategy was based on a modification of a conventional DNA-staining dye to suppress its affinity to the original targets, and subsequent re-selection of aptamers that would bind to the modified dye. Along this line, we prepared an environmental polarity-sensitive Hoechst derivative with low affinity to the usual AT-rich dsDNA targets. DNA aptamers, in vitro selected from a random pool, worked as a trigger to enhance the fluorescence of an otherwise nonfluorescent Hoechst derivative.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aptamers, Nucleotide / chemistry*
  • Bisbenzimidazole / analogs & derivatives*
  • DNA / chemistry
  • DNA Probes / chemistry
  • Fluorescent Dyes / chemistry*

Substances

  • Aptamers, Nucleotide
  • DNA Probes
  • Fluorescent Dyes
  • DNA
  • Bisbenzimidazole