Improved interpretation of genotypic changes in the HIV-1 reverse transcriptase coding region that determine the virological response to didanosine

J Infect Dis. 2007 Dec 1;196(11):1645-53. doi: 10.1086/522231. Epub 2007 Oct 26.

Abstract

Background: Consensus on the interpretation of mutations in the human immunodeficiency virus (HIV)-1 reverse transcriptase (RT) gene that predict the response to didanosine treatment is needed.

Methods: Baseline HIV-1 RT genotypes and 12-week virological outcomes for patients undergoing didanosine-containing salvage regimens were extracted from prospective studies. Existing didanosine genotypic-resistance interpretation rules were validated in the entire-patient data set. Mutations were given weighted positive or negative scores according to their coefficient of correlation with virological response in a derivation set. The score resulting from the algebraic sum of the mutations was then validated in an independent data set.

Results: A total of 485 patients were analyzed. The didanosine-resistance scores derived from the Jaguar and Gesca studies predicted virological outcome. The best correlation with response was found with the derived score (M41L x 2) + E44D/A/G + T69D/S/N/A + (L210W x 2) + T215Y or revertants + L228H/R - D123E/N/G/S, by use of which viruses were categorized as being susceptible (score < or =0), as having intermediate resistance (1-3), and as being resistant (> or =4) to didanosine. In the validation set, the adjusted mean difference in 12-week virological response was +0.34 log(10) copies/mL (95% confidence interval, +0.11 to +0.57; P=.004) per higher resistance category. Correlation with virological response constantly outperformed that obtained with the previous interpretation.

Conclusion: The improved genotypic-resistance interpretation score can be applied to better guide the use of didanosine in treatment-experienced individuals.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acquired Immunodeficiency Syndrome / drug therapy*
  • Adult
  • Alkynes
  • Anti-HIV Agents / pharmacology*
  • Benzoxazines / pharmacology
  • Cyclopropanes
  • Didanosine / pharmacology*
  • Female
  • Genotype
  • HIV Reverse Transcriptase / drug effects
  • HIV Reverse Transcriptase / genetics*
  • HIV-1 / drug effects*
  • HIV-1 / enzymology
  • HIV-1 / genetics*
  • Humans
  • Lopinavir
  • Male
  • Middle Aged
  • Mutation*
  • Nelfinavir / pharmacology
  • Nevirapine / pharmacology
  • Pyrimidinones / pharmacology
  • RNA, Viral / analysis
  • Reverse Transcriptase Inhibitors / pharmacology*
  • Salvage Therapy

Substances

  • Alkynes
  • Anti-HIV Agents
  • Benzoxazines
  • Cyclopropanes
  • Pyrimidinones
  • RNA, Viral
  • Reverse Transcriptase Inhibitors
  • Lopinavir
  • Nevirapine
  • reverse transcriptase, Human immunodeficiency virus 1
  • HIV Reverse Transcriptase
  • Nelfinavir
  • efavirenz
  • Didanosine