NPIDB: a database of nucleic acids-protein interactions

Sergei Spirin; Mikhail Titov; Anna Karyagina; Andrei Alexeevski

doi:10.1093/bioinformatics/btm519

NPIDB: a database of nucleic acids-protein interactions

Bioinformatics. 2007 Dec 1;23(23):3247-8. doi: 10.1093/bioinformatics/btm519. Epub 2007 Oct 31.

Authors

Sergei Spirin¹, Mikhail Titov, Anna Karyagina, Andrei Alexeevski

Affiliation

¹ A.N.Belozersky Institute of Physical and Chemical Biology, Moscow State University, Moscow, Russia. sas@belozersky.msu.ru

PMID: 17977883
DOI: 10.1093/bioinformatics/btm519

Abstract

The database NPIDB (Nucleic Acids-Protein Interaction DataBase) contains information derived from structures of DNA-protein and RNA-protein complexes extracted from PDB (1834 complexes in July 2007). It is organized as a collection of files in PDB format and is equipped with a web-interface and a set of tools for extracting biologically meaningful characteristics of complexes. The content of the database is weekly updated.

Availability: http://monkey.belozersky.msu.ru/NPIDB/

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Binding Sites
DNA-Binding Proteins / chemistry*
DNA-Binding Proteins / metabolism
Database Management Systems*
Databases, Genetic*
Information Storage and Retrieval / methods*
Nucleic Acids / chemistry*
Nucleic Acids / metabolism
Protein Binding
Protein Interaction Mapping / methods*
User-Computer Interface*

Substances

DNA-Binding Proteins
Nucleic Acids