CellMontage: similar expression profile search server

Bioinformatics. 2007 Nov 15;23(22):3103-4. doi: 10.1093/bioinformatics/btm462. Epub 2007 Sep 25.

Abstract

The establishment and rapid expansion of microarray databases has created a need for new search tools. Here we present CellMontage, the first server for expression profile similarity search over a large database-69 000 microarray experiments derived from NCBI's; GEO site. CellMontage provides a novel, content-based search engine for accessing gene expression data. Microarray experiments with similar overall expression to a user-provided expression profile (e.g. microarray experiment) are computed and displayed-usually within 20 s. The core search engine software is downloadable from the site.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Database Management Systems*
  • Databases, Protein*
  • Gene Expression Profiling / methods*
  • Information Storage and Retrieval / methods*
  • Internet*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Proteins / chemistry*
  • Proteins / classification
  • Proteins / metabolism*
  • Software
  • User-Computer Interface*

Substances

  • Proteins