Inhibition of nonsense-mediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies

J Cell Biol. 2007 Sep 24;178(7):1145-60. doi: 10.1083/jcb.200611086.

Abstract

In mammals, nonsense-mediated mRNA decay (NMD) is a quality-control mechanism that degrades mRNA harboring a premature termination codon to prevent the synthesis of truncated proteins. To gain insight into the NMD mechanism, we identified NMD inhibitor 1 (NMDI 1) as a small molecule inhibitor of the NMD pathway. We characterized the mode of action of this compound and demonstrated that it acts upstream of hUPF1. NMDI 1 induced the loss of interactions between hSMG5 and hUPF1 and the stabilization of hyperphosphorylated isoforms of hUPF1. Incubation of cells with NMDI 1 allowed us to demonstrate that NMD factors and mRNAs subject to NMD transit through processing bodies (P-bodies), as is the case in yeast. The results suggest a model in which mRNA and NMD factors are sequentially recruited to P-bodies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carrier Proteins / metabolism
  • Codon, Nonsense / metabolism*
  • Cytoplasmic Structures / drug effects*
  • Cytoplasmic Structures / metabolism*
  • Down-Regulation / drug effects
  • Exoribonucleases / genetics
  • HeLa Cells
  • Humans
  • Indoles / pharmacology*
  • Microtubule-Associated Proteins / genetics
  • Models, Biological
  • Mutant Proteins / metabolism
  • Phosphorylation / drug effects
  • Protein Binding / drug effects
  • Protein Isoforms / metabolism
  • Protein Transport / drug effects
  • RNA Helicases
  • RNA Stability / drug effects*
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / metabolism
  • Thermodynamics
  • Trans-Activators / metabolism
  • Transcription Factors / genetics

Substances

  • Carrier Proteins
  • Codon, Nonsense
  • Indoles
  • Microtubule-Associated Proteins
  • Mutant Proteins
  • Protein Isoforms
  • RNA, Messenger
  • RNA-Binding Proteins
  • SMG5 protein, human
  • Trans-Activators
  • Transcription Factors
  • UPF2 protein, human
  • indole
  • Exoribonucleases
  • XRN1 protein, human
  • RNA Helicases
  • UPF1 protein, human