Structure of mini-B, a functional fragment of surfactant protein B, in detergent micelles

Biochemistry. 2007 Oct 2;46(39):11047-56. doi: 10.1021/bi7011756. Epub 2007 Sep 11.

Abstract

Surfactant protein B (SP-B) is essential for normal lung surfactant function, which is in itself essential to life. However, the molecular basis for SP-B's activity is not understood and a high-resolution structure for SP-B has not been determined. Mini-B is a 34-residue peptide with internal disulfide linkages that is composed of the N- and C-terminal helical regions of SP-B. It has been shown to retain similar activity to full-length SP-B in certain in vitro and in vivo studies. We have used solution NMR to determine the structure of Mini-B in the presence of micelles composed of the anionic detergent sodium dodecyl sulfate (SDS). Under these conditions, Mini-B forms two alpha-helices connected by an unstructured loop. Mini-B possesses a strikingly amphipathic surface with a large positively charged patch on one face of the peptide and a large hydrophobic patch on the opposite face. A tryptophan side chain extends outward from the peptide in a position to interact with lipids at the polar/apolar interface. Interhelix interactions are stabilized by both disulfide bonds and by interleaving of hydrophobic side chains from the two helices.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Detergents / chemistry*
  • Hydrophobic and Hydrophilic Interactions
  • Magnetic Resonance Spectroscopy
  • Micelles*
  • Models, Biological
  • Models, Molecular
  • Molecular Sequence Data
  • Peptide Fragments / chemical synthesis
  • Peptide Fragments / chemistry*
  • Pulmonary Surfactant-Associated Protein B / chemistry*
  • Sodium Dodecyl Sulfate / chemistry

Substances

  • Detergents
  • Micelles
  • Peptide Fragments
  • Pulmonary Surfactant-Associated Protein B
  • Sodium Dodecyl Sulfate

Associated data

  • PDB/2DWF
  • PDB/2JOU